> Analogies are like models, some are useful, but they're all wrong.

Very much agree. Every abstraction loses something and so is wrong in some sense, but some shave off in clever places, and allow new shortcut paths of thought and insight, sometimes to an existing place... but sometimes to a new place that was previously unreachable, or not sufficiently reachable by the necessary type of attention/minds.

> The mechanisms and math behind protein folding and an analogy between that and storytelling doesn't necessarily give us any mechanism for or deep understanding into storytelling.

Respectfully, I actually disagree (as someone trained in biochemistry).

For one example:

proteins = 1D chemical structures, peptides popped onto end one-at-a-time, that in the right chemical environment, fold into a low-energy 3D state that transforms its environment through work

stories = 1D semantic structures, words popped onto end one-at-a-time, that in the right cultural/cognitive environment, fold into a low-energy HD mental model that transforms its environment through work

This has led me to render embeddings of sliding windows of narrative streams (to investigate shapes of broadcast stories), and look for analogs to "active sites" in the way that a story interacts with the cultural medium, measured through dimensional reduction of aggregate valence reactions amongst a viewing audience.

Obviously there's more to the metaphors I use than that, but that's the one I'm leaning on to inform my work with sensemaking and map-making from valence response data. Aggregating crowd-sourced valence reactions to linear narratives gains a lot of insight by reflecting it off how we process and think about linear peptides in protein folding.

I've been developing tools inspired by these metaphors, and my research and prototypes are directly informed by what knowledge of the biological domain inspires me to port into social domain. I'm lucky to have interactions with interested parties associated with federal government, practitioners of democratic reform, and academics investigating platonic space hypotheses. I'm definitely on the edge of an ecosystem, but anything I've done of value has been guided by the metaphors that direct my attention to potential applications and research. Someone could get to my conclusions another way, but the metaphors are my cheat codes to arrive there early :)

And it goes both ways along a good metaphor -- People who develop tools in the biological sciences have told me that my porting their methods into my own distant domain has inspired them to improve their tools to ask better questions of their own biological data. So it's very fruitful work that I wholly credit to travelling both ways across an insightful metaphor. https://i.imgur.com/AeYxx7p.png