None of those (other than submodules which is just vendoring) does dependency management. They are more configuration management than anything. C, Python, Perl (and maybe ruby?) relies on flag switches and environment variables to find all the necessary files and modules for compiling/running a script. Cmake and autoconf just configure those.

With NPM and Rust's focus on project's level dependencies, there's no longer emphasis on API stability. Instead we have breakage every months, forcing everyone on the upgrade treadmill. It's easier to audit C library because they focus mostly on security updates instead of redesigning the API for the nth time.