What we would call O(n^2) in your rewriting message history would be the case where you have an empty database and you need to populate it with a certain message history. The individual operations would take 1, 2, 3, .. n steps, so (1/2)*n^2 in total, so O(n^2).
This is the operation that is basically done for each message in an LLM chat in the logical level: the complete context/history is sent in to be processed. If you wish to process only the additions, you must preserve the processed state on server-side (in KV cache). KV caches can be very large, e.g. tens of gigabytes.