>"MCP is less discoverable than a CLI" - that doesn't make any sense in terms of agent context. Once an MCP is connected the agent should have full understanding of the tools and their use, before even attempting to use them. In order for the agent to even know about a CLI you need to guide the agent towards it - manually, every single session, or through a "skill" injection - and it needs to run the CLI commands to check them.

Knowledge about any MCP is not something special inherent in the LLM, it's just an agent side thing. When it comes to the LLM, it's just some text injected to its prompting, just like a CLI would be.