This is confusing to me. What is composability if not calling a program, getting its program, and feeding it into another program as input? Why does it matter if that output is stored in the LLM's context, or if it's stored in a file, or if it's stored ephemerally?

Maybe I'm misunderstanding the definition of composability, but it sounds like your issue isn't that MCP isn't composable, but that it's wasteful because it adds data from interstitial steps to the context. But there are numerous ways to circumvent this.

For example, it wouldn't be hard to create a tool that just runs an LLM, so when the main LLM convo calls this tool it's effectively a subagent. This subagent can do work, call MCPs, store their responses in its context, and thereby feed that data as input into other MCPs/CLIs, and continue in this way until it's done with its work, then return its final result and disappear. The main LLM will only get the result and its context won't be polluted with intermediary steps.

This is pretty trivial to implement.