The DS, more specifically the arm946e-s has an MPU, not a MMU (you're confusing it with the 3DS's Arm11). Not like it makes much of a difference anyway, you configure either once or twice then leave them be.

Honestly, I think why the GBA is more popular than the DS for that kind of thing is because it only has one screen (much less awkward to emulate), has high-quality emulators that are mostly free of bugs (mGBA most notably), and its aspect ratio is better than the DS anyway (3:2 upscales really well on 16:10 devices). That is to say, it's much easier to emulate GBA software on a phone or a Steam Deck than it is to emulate DS software.