pairing this with rewind-like applications, it would seem that "user files" and particularly "user organized files" as a paradigm could also be completely unnecessary, as you recall states/activities/projects via intention and the agent presents you with the right abstraction to navigate those
There is a build in filesystem handling system. For example, if you ask it to build a Todo task agent it will need to persist the tasks and their state to disk. It knows which syscalls to use in the pneuma microkernal and it builds with that in mind. When you start the app it will reauesf access to the file system.
are you using vector store for long term persistence or standard fs and model interaces with it via tools?