yarn with zero-installs removes an awful lot of pain present in npm and pnpm. Its practically the whole point of yarn berry.
Firstly - with yarn pnp zero-installs, you don't have to run an `install` every time you switch branch, just in case a dep changed. So much dev time is wasted due to this.
Secondly - "it worked on my machine" is eliminated. CI and deploy use the exact same files - this is particularly important for deeply nested range satisfied dependencies.
Thirdly - packages committed to the repo allows for meaningful retrospectives and automated security reviews. When working in ops, packages changing is hell.
All of this is facilitated by the zip files that the comment you replied to was discussing, that you tangented away from.
The graph you have linked is fundamentally odd. Firstly - there is no good explanation of what it is actually showing. I've had claude spin on it and it reckons its npm download counts. This leads to it being a completely flawed graph! Yarn berry is typically installed either via corepack or bootstrapped via package.json and the system yarn binary. Yarn even saves itself into your repo. pnpm is never (I believe) bundled with the system node, wheras yarn and npm typically are.
Your graph doesn't show what you claim it does.