I worked on a product that included pre-trimmed HC-49/S through-hole crystal oscillators, and not a single crystal failed. It was a low-volume product, but there were still probably tens too hundreds of thousands of them built.

When a batch with 20 MHz surface-mount crystals, in a package similar to the one in the article, were accidentally run through an ultrasonic cleaner, the failure rate was immediately noticeable, in the single-digit percent.

Leads of through-hole components are usually trimmed before assembly, on both manual and automated assembly lines, (e.g. https://www.youtube.com/watch?v=cjVY8lb0LG8) and I've never seen this prohibited in a datasheet, but ultrasonic cleaning is usually prohibited.