Oh sure, lots of things to miss about that time... startup vibes, underdog causes during the worst of the Bush years, and work that ranged from the Mac stuff to Linux/BSD backend admin, PHP dev, introduction of the tech team to SVN/version control, even some music composition for a video. And close work with a bunch of folks on the team who now have their own Wikipedia pages, as well as high-profile clients. My boss left eventually in mid 2005 to go work for (then Senator) Obama and personally interviewed him for / produced his podcast, posted to his Flickr, and that sort of thing.
The commuting... not so much. Moved into DC proper after that year, which itself was a great adventure. Leaving the house at 5:30-6:00am and returning at 8:30-9:00pm was no way to live.