Welll. On guitar you cant really use the "matching the beats" or the thing where you play the 4th on the string below and make them sound in unison, because if you do that all the way up the neck your guitar will be tuned to Just intonation instead of equal interval intonation and certain chords will sound very bad. A series of perfect 4ths and a perfect 3rd does not add up to an octave. Its better to reference everything to the low e string and just kind of know where the pitches are supposed to land.

That's a side note, the rest of what you wrote was very informative!