Commute != pardon. Santos is still convicted and guilty of all of those charges. He just doesn't have to serve the rest of the sentence. I'm not sure if those were felony charges, but if they were and he's in a state that doesn't allow felons to vote...
A pardon makes it all go away. None of the baggage of convictions follow. Finding a job or a place to live is something they can do, as well as voting again.
By not pardoning, the state can't recharge them.